PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa20g071190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 465aa    MW: 50677.6 Da    PI: 8.3363
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa20g071190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.1e-056888323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++Cgk F r  nL+ H r H
  Csa20g071190.1 68 CEICGKGFQRDQNLQLHRRGH 88
                    *******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.0E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.78E-56588No hitNo description
PROSITE profilePS5015711.4896688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-5137162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MTTGEVLQTI SSGSGFAQSS STTLDHDESL INPPLVKKKR NLPGNPDPEA EVIALSPKTL  60
MATNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EVRKRVYVCP EKTCVHHHSS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCAKR YAVQSDCKAH SKTCGTREYR CDCGTIFSRR  180
DSFITHRAFC DALAEETAKI NAASHLNGLA AAGAAGSVNV NYQYLMGTLI PPLQPFVPLP  240
QTNQNHHHQH FQPPPASSSS LSIWMGQDIA PPQPQNYDWV FGNAKATSPC IDNNNNHDEL  300
ITQTANASST TTLSVPSLFS NDQSQNANAN ANANMSATAL LQKAAEIGAS STTTAATNDP  360
STFLHSFPLK SSDQTATYDG GEKFFALFGS NNNIGLMSHS LDQETENVRN DVTVASPMDE  420
LQNYPWKRRR VDGGAEGGGG GQTRDFLGVG VQTLCHPSSI NGWI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426430KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0372020.0AY037202.1 Arabidopsis thaliana AT5g44160/MLN1_8 mRNA, complete cds.
GenBankBT0026850.0BT002685.1 Arabidopsis thaliana At5g44160/MLN1_8 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494419.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9FFH30.0IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLD7MN230.0D7MN23_ARALL; Zinc finger family protein
STRINGscaffold_800604.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.10.0C2H2-like zinc finger protein